Meta-Storms

  • Introduction
  • Meta-Storms is a metagenomic database system toolkit to systematically and efficiently organize and search metagenomic data. It includes the following components: (i) creating a database of metagenomic samples based on their taxonomical annotations, (ii) efficiently indexing all samples in the database based on taxonomical structures, and (iii) searching for a metagenomic sample against the database by a fast scoring function based on quantitative phylogeny. Meta-Storms also has modules to efficiently manage the database, which is especially useful when the database is huge.

    The new version 1.2 is released now.

    The GPU-Meta-Storms version 1.0 is released now

  • Input pre-computation
  • The input samples should be pre-computed by Parallel-META of which the results could be visuallzed by Meta-See.

  • Download
  • Platform
    Version
    Release Date
    Materials
    1.2
    09/12/2013
    1.0
    10/31/2013
  • Development
  • Meta-Storms provides the API for extensible development of scoring function which is used to compare two metagenomic samples.

    Download development package

  • Publications
  • Xiaoquan Su, Xuetao Wang, Gongchao Jing, Kang Ning. GPU-Meta-Storms: Computing the structure similarities among massive amount of microbial community samples using GPU. Bioinformatics 2013; doi: 10.1093/bioinformatics/btt736

    Xiaoquan Su, Jian Xu, Kang Ning. Meta-Storms: Efficient Search for Similar Microbial Communities Based on a Novel Indexing Scheme and Similarity Score for Metagenomic Data. Bioinformatics 2012; doi: 10.1093/bioinformatics/bts470

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